GBC/ACM and IEEE Computer Society
7:00 PM, Thursday, November 20, 2008
Broad Institute Auditorium (MIT building NE-30)
Open-architectures for Reading, Writing & Computing with Genomes
George Church
Relative to a reference human genome, your personal genome has about
10,000 DNA variations which affect final protein function and 3 million
which do not. While “association studies” of common DNA variations with
diseases yield, so far, weak predictive power and few causative
mutations, researchers expect that this will be soon remedied by
genome-wide sequencing. Second-generation sequencing (multiplex cycles
of fluidics and imaging) has brought costs down since 2004 by
10,000-fold $300M to $30K -- and less than $1000 via targeted
sequencing including coding variants (~1% of the genome), regulation,
microbes and immune response (quantitated by sequencing). Polonator.org
is the only of the second-generation that has open architecture for
hardware, software, and wetware – and 4-fold less expensive. Similarly
PersonalGenomes.org is a uniquely open effort to integrate the above
genomic data with comprehensive sets of medical and non-medical traits.
We are collecting over 20 terabytes of raw genomic data for each of
100,000 research subject volunteers -- which boils down to less than a
gigabyte each of differences from the reference genomes and
quantitative genomic and trait data. Like DNA sequencing, raw DNA
synthesis has come down in cost by 7-logs since 1980, but the next
challenge currently being met is applying this to “programming”
organism-level functions – by developing computer-aided design, new
homologous recombination instruments, lab-scale accelerated evolution
and personalized stem cells.George Church is Professor of Genetics at Harvard Medical School and Director of the Center for Computational Genetics.
With degrees from Duke University in Chemistry and Zoology,
he co-authored research on 3D-software & RNA structure with Sung-Hou Kim.
His PhD from Harvard in Biochemistry & Molecular Biology with Wally Gilbert
included the first direct genomic sequencing method in 1984;
initiating the Human Genome Project then as a Research Scientist at newly-formed Biogen Inc. and
a Monsanto Life Sciences Research Fellow at UCSF with Gail Martin.
He invented the broadly-applied concepts of molecular multiplexing and tags,
homologous recombination methods, and array DNA synthesizers.
Technology transfer of automated sequencing & software to Genome Therapeutics Corp. resulted in
the first commercial genome sequence (the human pathogen, H. pylori, 1994).
He has served in advisory roles for 12 journals (including Nature Molecular Systems Biology),
5 granting agencies and 24 biotech companies (e.g. recemtly founding Codon Devices and LS9).
Current research focuses on integrating biosystems-modeling with the Personal Genome Project &
synthetic biology.This joint meeting of the Boston/Central New England
Chapter of the IEEE Computer Society and GBC/ACM will be held in the Broad Institute Auditorium
(MIT building NE-30).
The Broad Institute is on Main St between Vassar and Ames streets.
You can see it on a map at this location. The auditorium is on the ground floor near the entrance.For more information contact Peter Mager
(p.mager at computer.org)
Updated:
August 24, 2008.
This joint meeting of the Boston/Central New England
Chapter of the IEEE Computer Society and GBC/ACM will be held in the Broad Institute Auditorium
(MIT building NE-30).
The Broad Institute is on Main St between Vassar and Ames streets.
You can see it on a map at this location. The auditorium is on the ground floor near the entrance.